GEOSearchTerm: GEOSearchTerm

Description Usage Arguments Details Value Author(s) Examples

View source: R/GEOsearchterm.R

Description

Perform searching in NCBI GEO database.

Usage

1
GEOSearchTerm(termlist, type = "GSE")

Arguments

termlist

A character vector of terms to be searched in NCBI GEO. Typically the direct output of function "termalias"

type

Either "GSE" or "GSM". The function will search either GSE and GSM on GEO.

Details

Search the terms one by one in NCBI GEO database and return an integrated table of search results. The returned results should contain exactly the same information as the results returned by directly searching in http://www.ncbi.nlm.nih.gov/geo/.

Value

A data frame containing the search results returned from NCBI GEO.

Author(s)

Zhicheng Ji, Hongkai Ji <zji4@zji4.edu>

Examples

1
GEOSearchTerm("Oct4 RNA-seq")

GEOsearch documentation built on Nov. 17, 2017, 8:37 a.m.