TargetScan.miRNA: TargetScan.miRNA
In GIGSEA: Genotype Imputed Gene Set Enrichment Analysis
Description
Usage
Format
Source
Description
Gene sets of predicted human miRNA targets were obtained from TargetScan.
TargetScan groups miRNAs that have identical subsequences at positions 2
through 8 of the miRNA, i.e. the 2-7 seed region plus the 8th nucleotide,
and provides predictions for each such seed motif.
Usage
1
Format
A list with two items:
- net
a sparse matrix, the connectivity between terms and genes,
comprising 87 miRNA seed motifs and 9861 genes
- annot
a data frame, description of terms
...
Source
GIGSEA documentation built on Nov. 8, 2020, 7:02 p.m.
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Description Usage Format Source
Description
Gene sets of predicted human miRNA targets were obtained from TargetScan. TargetScan groups miRNAs that have identical subsequences at positions 2 through 8 of the miRNA, i.e. the 2-7 seed region plus the 8th nucleotide, and provides predictions for each such seed motif.
Usage
1 |
Format
A list with two items:
- net
a sparse matrix, the connectivity between terms and genes, comprising 87 miRNA seed motifs and 9861 genes
- annot
a data frame, description of terms
...
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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