API for GOTHiC
Binomial test for Hi-C data analysis
| Global functions | |
|---|---|
| .binInteractions | Source code |
| .binomialHiC | Source code |
| .binomialHiChicup | Source code |
| .countDuplicates | Source code |
| .countDuplicatesOfRaw | Source code |
| .exportCoverage | Source code |
| .filterOutDuplicates | Source code |
| .findOverlaps.circle | Source code |
| .findOverlaps.parallel | Source code |
| .fixChromosomeNames | Source code |
| .getHindIIIsitesFromHicup | Source code |
| .getRestrictionSitesFromBSgenome | Source code |
| .importHicup | Source code |
| .mapHicupToRestrictionFragment | Source code |
| .onlyPairing | Source code |
| .putRangesOnFirstCircle | Source code |
| .strandAsSignedNumber | Source code |
| GOTHiC | Man page Source code |
| GOTHiChicup | Man page Source code |
| filtered | Man page |
| lymphoid_chr20_paired_filtered | Man page |
| mapReadsToRestrictionSites | Man page Source code |
| pairReads | Man page Source code |
