API for GeneBreak
Gene Break Detection
| Global functions | |
|---|---|
| .cumgf | Source code |
| .gilbertTest | Source code |
| .glmbreak | Source code |
| .runWorkflow | Source code |
| CopyNumberBreakPointGenes | Man page |
| CopyNumberBreakPointGenes-class | Man page |
| CopyNumberBreakPoints | Man page |
| CopyNumberBreakPoints-class | Man page |
| GeneBreak | Man page |
| GeneBreak-package | Man page |
| accessOptions | Man page |
| accessOptions,CopyNumberBreakPoints-method | Man page |
| addGeneAnnotation | Man page |
| addGeneAnnotation,CopyNumberBreakPoints-method | Man page |
| bpFilter | Man page |
| bpFilter,CopyNumberBreakPoints-method | Man page |
| bpGenes | Man page |
| bpGenes,CopyNumberBreakPointGenes-method | Man page |
| bpPlot | Man page |
| bpPlot,CopyNumberBreakPoints-method | Man page |
| bpStats | Man page |
| bpStats,CopyNumberBreakPoints-method | Man page |
| breakpointData | Man page |
| breakpointData,CopyNumberBreakPoints-method | Man page |
| breakpointsPerGene | Man page |
| breakpointsPerGene,CopyNumberBreakPointGenes-method | Man page |
| callData | Man page |
| callData,CopyNumberBreakPoints-method | Man page |
| copynumber.data.chr18 | Man page |
| copynumber.data.chr20 | Man page |
| copynumber.data.chr21 | Man page |
| ens.gene.ann.hg18 | Man page |
| ens.gene.ann.hg19 | Man page |
| ens.gene.ann.hg38 | Man page |
| featureChromosomes | Man page |
| featureChromosomes,CopyNumberBreakPoints-method | Man page |
| featureInfo | Man page |
| featureInfo,CopyNumberBreakPoints-method | Man page |
| featuresPerGene | Man page |
| featuresPerGene,CopyNumberBreakPointGenes-method | Man page |
| geneChromosomes | Man page |
| geneChromosomes,CopyNumberBreakPointGenes-method | Man page |
| geneInfo | Man page |
| geneInfo,CopyNumberBreakPointGenes-method | Man page |
| getBreakpoints | Man page Source code |
| namesFeatures | Man page |
| namesFeatures,CopyNumberBreakPoints-method | Man page |
| recurrentGenes | Man page |
| recurrentGenes,CopyNumberBreakPointGenes-method | Man page |
| sampleNames | Man page |
| sampleNames,CopyNumberBreakPoints-method | Man page |
| segmentData | Man page |
| segmentData,CopyNumberBreakPoints-method | Man page |
