bpGenes-CopyNumberBreakPointGenes-method: bpGenes

In GeneBreak: Gene Break Detection

Description

Indentifies genes affected by breakpoint locations.

Usage

## S4 method for signature 'CopyNumberBreakPointGenes'
bpGenes(object)

Arguments

object

An object of class CopyNumberBreakPointGenes

Details

This step requires feature-to-gene annotations added to the input object (see ?addGeneAnnotation).

Value

Returns an object of class CopyNumberBreakPointGenes with gene-breakpoint information

Examples

data( copynumber.data.chr20 )
data( ens.gene.ann.hg18 )

bp <- getBreakpoints( copynumber.data.chr20 )
bp <- bpFilter( bp )
bp <- addGeneAnnotation( bp, ens.gene.ann.hg18 )
bp <- bpGenes( bp )

## options to inspect the data
bp
accessOptions( bp )

GeneBreak documentation built on Nov. 8, 2020, 8:18 p.m.