featuresPerGene-CopyNumberBreakPointGenes-method: Access Object featuresPerGene. This method returns a vector...
In GeneBreak: Gene Break Detection
Description
Usage
Arguments
Value
Examples
Description
Access Object featuresPerGene. This method returns a vector with gene-related features for a particular gene.
Usage
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## S4 method for signature 'CopyNumberBreakPointGenes'
featuresPerGene(object, geneName = NULL)
Arguments
object
An object of class CopyNumberBreakPoints
geneName
Exact Gene name as in the annotation
Value
a vector with gene-related features
Examples
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data( copynumber.data.chr20 )
data( ens.gene.ann.hg18 )
bp <- getBreakpoints( copynumber.data.chr20 )
bp <- bpFilter( bp )
bp <- addGeneAnnotation( bp, ens.gene.ann.hg18 )
bp <- bpGenes( bp )
featuresPerGene( bp, geneName="PCMTD2" )
GeneBreak documentation built on Nov. 8, 2020, 8:18 p.m.
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Description Usage Arguments Value Examples
Description
Access Object featuresPerGene. This method returns a vector with gene-related features for a particular gene.
Usage
1 2 | ## S4 method for signature 'CopyNumberBreakPointGenes'
featuresPerGene(object, geneName = NULL)
|
Arguments
object |
An object of class |
geneName |
Exact Gene name as in the annotation |
Value
a vector with gene-related features
Examples
1 2 3 4 5 6 7 8 | data( copynumber.data.chr20 )
data( ens.gene.ann.hg18 )
bp <- getBreakpoints( copynumber.data.chr20 )
bp <- bpFilter( bp )
bp <- addGeneAnnotation( bp, ens.gene.ann.hg18 )
bp <- bpGenes( bp )
featuresPerGene( bp, geneName="PCMTD2" )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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