GeneBreak: GeneBreak: A package for gene breakpoint detection on copy...
In GeneBreak: Gene Break Detection
Description
GeneBreak functions
Description
The GeneBreak package performs cohort based recurrent
gene breakpoint detection on copynumber data. It is possible
to use the output of the function CGHcall from
the package CGHcall or the function callBins from the
package QDNAseq as the input for this analysis.
GeneBreak functions
Analysis starts with the function getBreakpoints and continues with:
bpFilter to exclude certain breakpoints from the analysis
addGeneAnnotation to add gene location information
bpGenes to determine which features (probes/bins) are related to which genes
bpStats to determine which gene breaks are recurrent in the cohort
GeneBreak documentation built on Nov. 8, 2020, 8:18 p.m.
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Description GeneBreak functions
Description
The GeneBreak package performs cohort based recurrent
gene breakpoint detection on copynumber data. It is possible
to use the output of the function CGHcall from
the package CGHcall or the function callBins from the
package QDNAseq as the input for this analysis.
GeneBreak functions
Analysis starts with the function getBreakpoints and continues with:
bpFilter to exclude certain breakpoints from the analysis
addGeneAnnotation to add gene location information
bpGenes to determine which features (probes/bins) are related to which genes
bpStats to determine which gene breaks are recurrent in the cohort
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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