Man pages for GeneBreak
Gene Break Detection
| accessOptions-CopyNumberBreakPoints-method | Access Object Data. This method lists possible functions to... |
| addGeneAnnotation-CopyNumberBreakPoints-method | addGeneAnnotation |
| bpFilter-CopyNumberBreakPoints-method | bpFilter |
| bpGenes-CopyNumberBreakPointGenes-method | bpGenes |
| bpPlot-CopyNumberBreakPoints-method | bpPlot |
| bpStats-CopyNumberBreakPoints-method | bpStats |
| breakpointData-CopyNumberBreakPoints-method | Access Object breakpointData. This method returns a dataframe... |
| breakpointsPerGene-CopyNumberBreakPointGenes-method | Access Object breakpointsPerGene. This method returns a... |
| callData-CopyNumberBreakPoints-method | Access Object callData. This method returns a dataframe with... |
| CopyNumberBreakPointGenes-class | An S4 class to represent a CopyNumberBreakPointGenes object |
| CopyNumberBreakPoints-class | An S4 class to represent a CopyNumberBreakPoints object. |
| copynumber.data.chr18 | CGHcall Example copynumber data hg18 chr18 |
| copynumber.data.chr20 | CGHcall Example copynumber data hg18 chr20 |
| copynumber.data.chr21 | CGHcall Example copynumber data hg18 chr21 |
| ens.gene.ann.hg18 | Gene Annotation hg18 |
| ens.gene.ann.hg19 | Gene Annotation hg19 |
| ens.gene.ann.hg38 | Gene Annotation hg38 |
| featureChromosomes-CopyNumberBreakPoints-method | Access Object featureChromosomes. This method returns a... |
| featureInfo-CopyNumberBreakPoints-method | Access Options featureInfo. This method returns a dataframe... |
| featuresPerGene-CopyNumberBreakPointGenes-method | Access Object featuresPerGene. This method returns a vector... |
| GeneBreak | GeneBreak: A package for gene breakpoint detection on copy... |
| geneChromosomes-CopyNumberBreakPointGenes-method | Access Object geneChromosomes. This method returns a vector... |
| geneInfo-CopyNumberBreakPointGenes-method | Access Options geneInfo. This method returns a dataframe with... |
| getBreakpoints | getBreakpoints |
| namesFeatures-CopyNumberBreakPoints-method | Access Object namesFeatures. This method returns a vector... |
| recurrentGenes-CopyNumberBreakPointGenes-method | Access Options recurrentGenes. This method returns a... |
| sampleNames-CopyNumberBreakPoints-method | Access Object sampleNames. This method returns a vector with... |
| segmentData-CopyNumberBreakPoints-method | Access Object segmentData. This method returns a dataframe... |
