genomeBuilds lists the available genomes for a given
mapGenomeBuilds maps between UCSC and Ensemble
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A character vector of common names or organism
A character vector of genomes equivalent to UCSC version or Ensembl Assemblies
A single value equivalent to "UCSC" or "Ensembl" specifying the output genome
genomeBuilds lists the currently available genomes for a given list of
organisms. The genomes can be shown as "UCSC" or "Ensembl" IDs determined
organism must be specified as a character
vector and match common names (i.e "Dog", "Mouse") or organism name
(i.e "Homo sapiens", "Mus musculus") . A list of
available organisms can be shown using
mapGenomeBuilds provides a mapping between "UCSC" builds and
genome must be specified as a character
vector and match either a "UCSC" ID or an "Ensembl"
genomeBuilds can be used to get a list of available build
Ids for a given organism. NA's may be present in the output. This would
occur when the current genome build removed a previously defined
genome for an organism.
In both functions, if
style is not specified, "UCSC" is used as
A data.frame of builds for a given organism or genome in the specified
style == "UCSC", ucscID, ucscDate and
ensemblID are given. If
style == "Ensembl", ensemblID,
ensemblVersion, ensemblDate, and ucscID are given. The opposing ID is
given so that it is possible to distinguish between many-to-one
UCSC genome builds https://genome.ucsc.edu/FAQ/FAQreleases.html Ensembl genome builds http://useast.ensembl.org/info/website/archives/assembly.html
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