Files in GenomicRanges

Representation and manipulation of genomic intervals

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/R_init_GenomicRanges.c

src/transcript_utils.c

src/GenomicRanges.h

src/S4Vectors_stubs.c

src/IRanges_stubs.c

R/DelegatingGenomicRanges-class.R R/tileGenome.R R/makeGRangesFromDataFrame.R R/GRanges-class.R R/phicoef.R R/intra-range-methods.R R/GRangesFactor-class.R R/RangedData-methods.R R/utils.R R/coverage-methods.R R/GRangesList-class.R R/genomicvars.R R/genomic-range-squeezers.R R/nearest-methods.R R/GPos-class.R R/findOverlaps-methods.R R/normarg-utils.R R/zzz.R R/GenomicRanges-comparison.R R/constraint.R R/GenomicRanges-class.R R/setops-methods.R R/GNCList-class.R R/inter-range-methods.R R/makeGRangesListFromDataFrame.R R/strand-utils.R R/transcript-utils.R R/GenomicRangesList-class.R R/tile-methods.R R/absoluteRanges.R

vignettes/GenomicRanges.bib

vignettes/slides.sty

vignettes/GenomicRangesHOWTOs.Rnw

vignettes/GRanges_and_GRangesList_slides.Rnw

vignettes/Ten_things_slides.Rnw

vignettes/ExtendingGenomicRanges.Rnw

vignettes/GenomicRangesIntroduction.Rmd man/setops-methods.Rd man/strand-utils.Rd man/inter-range-methods.Rd man/GenomicRanges-comparison.Rd man/genomicvars.Rd man/DelegatingGenomicRanges-class.Rd man/phicoef.Rd man/coverage-methods.Rd man/GRangesFactor-class.Rd man/constraint.Rd man/GNCList-class.Rd man/GenomicRangesList-class.Rd man/tile-methods.Rd man/GRanges-class.Rd man/makeGRangesFromDataFrame.Rd man/GPos-class.Rd man/intra-range-methods.Rd man/tileGenome.Rd man/makeGRangesListFromDataFrame.Rd man/GRangesList-class.Rd man/genomic-range-squeezers.Rd man/findOverlaps-methods.Rd man/absoluteRanges.Rd man/nearest-methods.Rd tests/run_unitTests.R

inst/CITATION

inst/doc/Ten_things_slides.R

inst/doc/GenomicRangesHOWTOs.Rnw

inst/doc/GenomicRangesHOWTOs.pdf inst/doc/GenomicRangesIntroduction.R inst/doc/ExtendingGenomicRanges.R

inst/doc/GRanges_and_GRangesList_slides.Rnw

inst/doc/ExtendingGenomicRanges.pdf

inst/doc/Ten_things_slides.Rnw

inst/doc/GenomicRangesHOWTOs.R inst/doc/GRanges_and_GRangesList_slides.pdf

inst/doc/GenomicRangesIntroduction.html

inst/doc/ExtendingGenomicRanges.Rnw

inst/doc/GRanges_and_GRangesList_slides.R inst/doc/Ten_things_slides.pdf inst/doc/GenomicRangesIntroduction.Rmd

inst/extdata/feature_frags.txt

inst/scripts/timing_overlaps.R inst/unitTests/test_inter-range-methods.R inst/unitTests/test_GNCList-class.R inst/unitTests/test_intra-range-methods.R inst/unitTests/test_setops-methods.R inst/unitTests/test_GRanges-class.R inst/unitTests/test_GRangesList-class.R inst/unitTests/test_precede_follow.R inst/unitTests/test_makeGRangesFromDataFrame.R inst/unitTests/test_coverage-methods.R inst/unitTests/test_nearest-methods.R inst/unitTests/test_findOverlaps-methods.R inst/unitTests/test_makeGRangesListFromDataFrame.R inst/unitTests/test_GenomicRanges-comparison.R

GenomicRanges documentation built on Nov. 8, 2020, 5:46 p.m.