absoluteRanges | Transform genomic ranges into "absolute" ranges |
constraint | Enforcing constraints thru Constraint objects |
coverage-methods | Coverage of a GRanges or GRangesList object |
DelegatingGenomicRanges-class | DelegatingGenomicRanges objects |
findOverlaps-methods | Finding overlapping genomic ranges |
GenomicRanges-comparison | Comparing and ordering genomic ranges |
GenomicRangesList-class | GenomicRangesList objects |
genomic-range-squeezers | Squeeze the genomic ranges out of a range-based object |
genomicvars | Manipulating genomic variables |
GNCList-class | GNCList objects |
GPos-class | Memory-efficient representation of genomic positions |
GRanges-class | GRanges objects |
GRangesFactor-class | GRangesFactor objects |
GRangesList-class | GRangesList objects |
inter-range-methods | Inter range transformations of a GRanges or GRangesList... |
intra-range-methods | Intra range transformations of a GRanges or GRangesList... |
makeGRangesFromDataFrame | Make a GRanges object from a data.frame or DataFrame |
makeGRangesListFromDataFrame | Make a GRangesList object from a data.frame or DataFrame |
nearest-methods | Finding the nearest genomic range/position neighbor |
phicoef | Calculate the "phi coefficient" between two binary variables |
setops-methods | Set operations on genomic ranges |
strand-utils | Strand utilities |
tileGenome | Put (virtual) tiles on a given genome |
tile-methods | Generate windows for a GenomicRanges |
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