API for GenomicTuples
Representation and Manipulation of Genomic Tuples

Global functions
$,GTuples-method	Man page
$<-,GTuples,numeric-method	Man page
.GT2DT	Man page Source code
.GTuples.asIntegerTuples	Source code
.IPDCpp	Man page Source code
.allTuplesSortedCpp	Man page Source code
.countOverlaps.definition	Source code
.duplicated.GTuples	Source code
.findEqual.GTuples	Man page Source code
.makeNakedMatFromGTuples	Source code
.matrixDiffWithRecycling	Man page Source code
.onUnload	Source code
.order.GTuples	Source code
.pcompareGTuplesCpp	Man page Source code
.pcompare_GTuples	Source code
.sort.GTuples	Source code
.unlist_list_of_GTuples	Source code
.valid.GTuples	Source code
.valid.GTuples.mcols	Source code
.valid.GTuples.pos	Source code
.valid.GTuplesList	Source code
.valid.GTuplesList.mcols	Source code
.zero_range	Man page Source code
GTuples	Man page Man page Source code
GTuples-class	Man page
GTuples-comparison	Man page
GTuplesList	Man page Man page Source code
GTuplesList-class	Man page
GenomicTuples-package	Man page
IPD	Man page
IPD,GTuples-method	Man page
IPD,GTuplesList-method	Man page
Ops,GTuples,numeric-method	Man page
[,GTuples-method	Man page
[,GTuplesList,ANY-method	Man page
[<-,GTuples-method	Man page
[<-,GTuplesList,ANY,ANY,ANY-method	Man page
[[<-,GTuplesList,ANY,ANY,ANY-method	Man page
as.character,GTuples-method	Man page
as.data.frame,GTuples-method	Man page
as.factor,GTuples-method	Man page
c,GTuples-method	Man page
class:GTuples	Man page
class:GTuplesList	Man page
coerce,GRanges,GTuples-method	Man page
coerce,GTuplesList,GRangesList-method	Man page
coerce,GTuplesList,data.frame-method	Man page
coerce,GTuplesList,list-method	Man page
countOverlaps	Man page
countOverlaps,GTuples,GTuples-method	Man page
coverage,GTuples-method	Man page
coverage,GTuplesList-method	Man page
disjoin,GTuples-method	Man page
disjoin,GTuplesList-method	Man page
disjointBins,GTuples-method	Man page
distance,GTuples,GTuples-method	Man page
distanceToNearest,GTuples,GTuples-method	Man page
distanceToNearest,GTuples,missing-method	Man page
duplicated,GTuples-method	Man page
duplicated.GTuples	Man page Source code
elementMetadata,GTuplesList-method	Man page
elementMetadata<-,GTuples-method	Man page
elementMetadata<-,GTuplesList-method	Man page
end,GTuples-method	Man page
end,GTuplesList-method	Man page
end<-,GTuples-method	Man page
end<-,GTuplesList-method	Man page
findOverlaps	Man page
findOverlaps,GTuples,GTuples-method	Man page
findOverlaps-methods	Man page
flank,GTuples-method	Man page
flank,GTuplesList-method	Man page
follow,GTuples,GTuples-method	Man page
follow,GTuples,missing-method	Man page
gaps,GTuples-method	Man page
granges,GTuples-method	Man page
gtlist	Man page
gtuples	Man page
intersect,GTuples,GTuples-method	Man page
intra-tuple-methods	Man page
is.unsorted,GTuples-method	Man page
isDisjoint,GTuples-method	Man page
isDisjoint,GTuplesList-method	Man page
length,GTuples-method	Man page
match,GTuples,GTuples-method	Man page
names,GTuples-method	Man page
names<-,GTuples-method	Man page
narrow	Man page
narrow,GTuples-method	Man page
nearest,GTuples,GTuples-method	Man page
nearest,GTuples,missing-method	Man page
nearest-methods	Man page
order,GTuples-method	Man page
overlapsAny	Man page
overlapsAny,GTuples,GTuples-method	Man page
pcompare,GTuples,GTuples-method	Man page
pgap,GTuples,GTuples-method	Man page
pintersect,GTuples,GTuples-method	Man page
pintersect,GTuples,GTuplesList-method	Man page
pintersect,GTuplesList,GTuples-method	Man page
pintersect,GTuplesList,GTuplesList-method	Man page
precede,GTuples,GTuples-method	Man page
precede,GTuples,missing-method	Man page
promoters,GTuples-method	Man page
promoters,GTuplesList-method	Man page
psetdiff,GTuples,GTuples-method	Man page
psetdiff,GTuples,GTuplesList-method	Man page
psetdiff,GTuplesList,GTuplesList-method	Man page
punion,GTuples,GTuples-method	Man page
punion,GTuples,GTuplesList-method	Man page
punion,GTuplesList,GTuples-method	Man page
range,GTuples-method	Man page
range,GTuplesList-method	Man page
ranges,GTuples-method	Man page
ranges,GTuplesList-method	Man page
ranges<-,GTuples-method	Man page
ranges<-,GTuplesList-method	Man page
rank,GTuples-method	Man page
reduce,GTuples-method	Man page
reduce,GTuplesList-method	Man page
relistToClass,GTuples-method	Man page
replaceROWS,NULL-method	Man page
resize,GTuples-method	Man page
resize,GTuplesList-method	Man page
restrict,GTuplesList-method	Man page
score,GTuples-method	Man page
score,GTuplesList-method	Man page
score<-,GTuples-method	Man page
score<-,GTuplesList-method	Man page
selfmatch,GTuples-method	Man page
seqinfo,GTuples-method	Man page
seqinfo,GTuplesList-method	Man page
seqinfo<-,GTuples-method	Man page
seqinfo<-,GTuplesList-method	Man page
seqnames,GTuples-method	Man page
seqnames,GTuplesList-method	Man page
seqnames<-,GTuples-method	Man page
seqnames<-,GTuplesList-method	Man page
setdiff,GTuples,GTuples-method	Man page
shift	Man page
shift,GTuples-method	Man page
shift,GTuplesList-method	Man page
show,GTuples-method	Man page
showGTuples	Source code
size	Man page
size,GTuples-method	Man page
size,GTuplesList-method	Man page
sort,GTuples-method	Man page
sort.GTuples	Man page Source code
start,GTuples-method	Man page
start,GTuplesList-method	Man page
start<-,GTuples-method	Man page
start<-,GTuplesList-method	Man page
strand,GTuples-method	Man page
strand,GTuplesList-method	Man page
strand<-,GTuples-method	Man page
strand<-,GTuplesList,ANY-method	Man page
strand<-,GTuplesList,character-method	Man page
subsetByOverlaps	Man page
subsetByOverlaps,GTuples,GTuples-method	Man page
tile,GTuples-method	Man page
trim,GTuples-method	Man page
tuples	Man page
tuples,GTuples-method	Man page
tuples,GTuplesList-method	Man page
tuples-squeezers	Man page
tuples<-	Man page
tuples<-,GTuples-method	Man page
tuples<-,GTuplesList-method	Man page
union,GTuples,GTuples-method	Man page
updateObject,GTuplesList-method	Man page
updateObject,GTupless-method	Man page
width,GTuples-method	Man page
width,GTuplesList-method	Man page
width<-,GTuples-method	Man page
width<-,GTuplesList-method	Man page
window,GTuples-method	Man page