illdefined-methods: Undefined methods

In GenomicTuples: Representation and Manipulation of Genomic Tuples

Description

These are methods defined for GRanges and GRangesList objects that have no well-defined equivalent for GTuples or GTuplesList. Therefore, I have explicitly written methods for these that return errors when called.

Examples

  gt3 <- GTuples(seqnames = c('chr1', 'chr1', 'chr1', 'chr1', 'chr2'), 
                 tuples = matrix(c(10L, 10L, 10L, 10L, 10L, 20L, 20L, 20L, 25L, 
                                   20L, 30L, 30L, 35L, 30L, 30L), ncol = 3), 
                 strand = c('+', '-', '*', '+', '+'))
  ## Not run: 
  # Will return errors
  narrow(gt3)
  reduce(gt3)
  
## End(Not run)

GenomicTuples documentation built on Nov. 8, 2020, 6:43 p.m.