API for GenomicTuples
Representation and Manipulation of Genomic Tuples

Global functions
$,GTuples-method Man page
$<-,GTuples,numeric-method Man page
GT2DT Source code
GTuples Man page Man page Source code
GTuples-class Man page
GTuples-comparison Man page
GTuples.asIntegerTuples Source code
GTuplesList Man page Man page Source code
GTuplesList-class Man page
GenomicTuples-package Man page
IPD Man page
IPD,GTuples-method Man page
IPD,GTuplesList-method Man page
IPDCpp Source code
Ops,GTuples,numeric-method Man page
[,GTuples-method Man page
[,GTuplesList,ANY-method Man page
[<-,GTuples-method Man page
[<-,GTuplesList,ANY,ANY,ANY-method Man page
[[<-,GTuplesList,ANY,ANY,ANY-method Man page
allTuplesSortedCpp Source code
as.character,GTuples-method Man page
as.data.frame,GTuples-method Man page
as.factor,GTuples-method Man page
c,GTuples-method Man page
class:GTuples Man page
class:GTuplesList Man page
coerce,GRanges,GTuples-method Man page
coerce,GTuplesList,GRangesList-method Man page
coerce,GTuplesList,data.frame-method Man page
coerce,GTuplesList,list-method Man page
countOverlaps Man page
countOverlaps,GTuples,GTuples-method Man page
countOverlaps.definition Source code
coverage,GTuples-method Man page
coverage,GTuplesList-method Man page
disjoin,GTuples-method Man page
disjoin,GTuplesList-method Man page
disjointBins,GTuples-method Man page
distance,GTuples,GTuples-method Man page
distanceToNearest,GTuples,GTuples-method Man page
distanceToNearest,GTuples,missing-method Man page
duplicated,GTuples-method Man page
duplicated.GTuples Man page Source code Source code
elementMetadata,GTuplesList-method Man page
elementMetadata<-,GTuples-method Man page
elementMetadata<-,GTuplesList-method Man page
end,GTuples-method Man page
end,GTuplesList-method Man page
end<-,GTuples-method Man page
end<-,GTuplesList-method Man page
findEqual.GTuples Source code
findOverlaps Man page
findOverlaps,GTuples,GTuples-method Man page
findOverlaps-methods Man page
flank,GTuples-method Man page
flank,GTuplesList-method Man page
follow,GTuples,GTuples-method Man page
follow,GTuples,missing-method Man page
gaps,GTuples-method Man page
granges,GTuples-method Man page
gtlist Man page
gtuples Man page
intersect,GTuples,GTuples-method Man page
intra-tuple-methods Man page
is.unsorted,GTuples-method Man page
isDisjoint,GTuples-method Man page
isDisjoint,GTuplesList-method Man page
length,GTuples-method Man page
makeNakedMatFromGTuples Source code
match,GTuples,GTuples-method Man page
matrixDiffWithRecycling Source code
names,GTuples-method Man page
names<-,GTuples-method Man page
narrow Man page
narrow,GTuples-method Man page
nearest,GTuples,GTuples-method Man page
nearest,GTuples,missing-method Man page
nearest-methods Man page
onUnload Source code
order,GTuples-method Man page
order.GTuples Source code
overlapsAny Man page
overlapsAny,GTuples,GTuples-method Man page
pcompare,GTuples,GTuples-method Man page
pcompareGTuplesCpp Source code
pcompare_GTuples Source code
pgap,GTuples,GTuples-method Man page
pintersect,GTuples,GTuples-method Man page
pintersect,GTuples,GTuplesList-method Man page
pintersect,GTuplesList,GTuples-method Man page
pintersect,GTuplesList,GTuplesList-method Man page
precede,GTuples,GTuples-method Man page
precede,GTuples,missing-method Man page
promoters,GTuples-method Man page
promoters,GTuplesList-method Man page
psetdiff,GTuples,GTuples-method Man page
psetdiff,GTuples,GTuplesList-method Man page
psetdiff,GTuplesList,GTuplesList-method Man page
punion,GTuples,GTuples-method Man page
punion,GTuples,GTuplesList-method Man page
punion,GTuplesList,GTuples-method Man page
range,GTuples-method Man page
range,GTuplesList-method Man page
ranges,GTuples-method Man page
ranges,GTuplesList-method Man page
ranges<-,GTuples-method Man page
ranges<-,GTuplesList-method Man page
rank,GTuples-method Man page
reduce,GTuples-method Man page
reduce,GTuplesList-method Man page
relistToClass,GTuples-method Man page
replaceROWS,NULL-method Man page
resize,GTuples-method Man page
resize,GTuplesList-method Man page
restrict,GTuplesList-method Man page
score,GTuples-method Man page
score,GTuplesList-method Man page
score<-,GTuples-method Man page
score<-,GTuplesList-method Man page
selfmatch,GTuples-method Man page
seqinfo,GTuples-method Man page
seqinfo,GTuplesList-method Man page
seqinfo<-,GTuples-method Man page
seqinfo<-,GTuplesList-method Man page
seqnames,GTuples-method Man page
seqnames,GTuplesList-method Man page
seqnames<-,GTuples-method Man page
seqnames<-,GTuplesList-method Man page
setdiff,GTuples,GTuples-method Man page
shift Man page
shift,GTuples-method Man page
shift,GTuplesList-method Man page
show,GTuples-method Man page
show,GTuplesList-method Man page
showGTuples Source code
size Man page
size,GTuples-method Man page
size,GTuplesList-method Man page
sort,GTuples-method Man page
sort.GTuples Man page Source code Source code
start,GTuples-method Man page
start,GTuplesList-method Man page
start<-,GTuples-method Man page
start<-,GTuplesList-method Man page
strand,GTuples-method Man page
strand,GTuplesList-method Man page
strand<-,GTuples-method Man page
strand<-,GTuplesList,ANY-method Man page
strand<-,GTuplesList,character-method Man page
subsetByOverlaps Man page
subsetByOverlaps,GTuples,GTuples-method Man page
tile,GTuples-method Man page
trim,GTuples-method Man page
tuples Man page
tuples,GTuples-method Man page
tuples,GTuplesList-method Man page
tuples-squeezers Man page
tuples<- Man page
tuples<-,GTuples-method Man page
tuples<-,GTuplesList-method Man page
union,GTuples,GTuples-method Man page
unlist_list_of_GTuples Source code
updateObject,GTuplesList-method Man page
updateObject,GTupless-method Man page
valid.GTuples Source code
valid.GTuples.mcols Source code
valid.GTuples.pos Source code
valid.GTuplesList Source code
valid.GTuplesList.mcols Source code
width,GTuples-method Man page
width,GTuplesList-method Man page
width<-,GTuples-method Man page
width<-,GTuplesList-method Man page
window,GTuples-method Man page
zero_range Source code
GenomicTuples documentation built on May 28, 2018, 6 p.m.