dot-pcompareGTuplesCpp: An internal function used to pcompare GTuples.
In GenomicTuples: Representation and Manipulation of Genomic Tuples

Description Usage Arguments Details Value

An internal function used to pcompare GTuples.

1	.pcompareGTuplesCpp(int_seqnames, int_strand, int_pos)

`int_seqnames`	An integer vector of length n. An integer representation of the difference in seqnames of each tuple.
`int_strand`	An integer vector of length n. An integer representation of the difference in strand of each tuple.
`int_pos`	An integer matrix with n rows. Each row represents the difference in positions of each tuple.

The tuples should have already been converted to integer representations, namely an integer vector for the difference in chromosome, an integer vector for the difference in strand and an integer matrix for the difference in positions.

An integer vector where each element is the comparison of a pair of tuples. If the first tuple in the pair is "<" than the second tuple then the return value for that element is < 0, if the first tuple in the pair is "==" the second tuple then the return value is 0, and if the first tuple is ">" that the second tuple then the return value is > 0.

GenomicTuples documentation built on Nov. 8, 2020, 6:43 p.m.