API for Genominator
Analyze, manage and store genomic data
| Global functions | |
|---|---|
| $,ExpData-method | Man page |
| .checkWrite | Source code |
| .formRegionsSQL | Source code |
| .getConnection | Source code |
| .makeDBConnectionName | Source code |
| .makeIndexName | Source code |
| .refreshConnection | Source code |
| .setConnection | Source code |
| .timeAndPrint | Source code |
| .writeRegionsTable | Source code |
| ExpData | Man page Source code |
| ExpData-class | Man page |
| Genominator | Man page |
| Genominator-package | Man page |
| [,ExpData-method | Man page |
| addPrimingWeights | Man page Source code |
| aggregateExpData | Man page Source code |
| applyMapped | Man page Source code |
| chr1_yeast | Man page |
| collapseExpData | Man page Source code |
| computeCoverage | Man page |
| computeDiffExpT | Source code |
| computePrimingWeights | Man page Source code |
| dbListFieldsAndTypes | Source code |
| emZeroInflated | Source code |
| fixWeights | Source code |
| getColnames | Man page Source code |
| getDBConnection | Man page Source code |
| getDBFilename | Man page Source code |
| getIndexColumns | Man page Source code |
| getMode | Man page Source code |
| getRegion | Man page Source code |
| getSchema | Man page Source code |
| getTablename | Man page Source code |
| head,ExpData-method | Man page |
| importFromAlignedReads | Man page Source code |
| importToExpData | Man page Source code |
| initialize,ExpData-method | Man page |
| joinExpData | Man page Source code |
| listTables | Man page Source code |
| makeAnnoFactory | Source code |
| makeConvolver | Source code |
| makeGeneRepresentation | Man page Source code |
| makeRegionPlotter | Source code |
| mergeWithAnnotation | Man page Source code |
| plot.genominator.coverage | Man page Source code |
| plot.genominator.goodness.of.fit | Man page Source code |
| regionGoodnessOfFit | Man page |
| regionGoodnessOfFit,ExpData-method | Man page |
| regionGoodnessOfFit,data.frame-method | Man page |
| regionGoodnessOfFit-methods | Man page |
| show,ExpData-method | Man page |
| simData | Source code |
| splitByAnnotation | Man page Source code |
| summarizeByAnnotation | Man page Source code |
| summarizeExpData | Man page Source code |
| tabularGoodnessOfFit | Source code |
| toAnnoData | Source code |
| validAnnotation | Man page Source code |
| yeastAnno | Man page |
| yeastAnno.sources | Man page |
| zNB | Source code |
| zPois | Source code |
