Genominator: Data backend for Genomic data

Description Author(s)

Description

This package implements a data backend for genomic data, ie. data mapped to a genome with chromosome, location and possibly strand information. The data is stored in an SQLite database.

We are primarily using the package for analyzing mRNA-Seq data generated from a Solexa machine, but have also used it in part of a larger project incorporating Solexa data, tiling array data from various experiments and cDNA sequencing data.

It interfaces well with the GenomeGraphs package.

Read the package vignettes for extensive use cases.

To cite this package, please see the output of citation("Genominator").

Author(s)

James Bullard bullard@stat.berkeley.edu, Kasper Daniel Hansen khansen@jhsph.edu



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