Files in Genominator
Analyze, manage and store genomic data
TODO
NEWS
DESCRIPTION
NAMESPACE
inst/sample.db
inst/CITATION
inst/scripts/import-marioni.sh
inst/scripts/consistency.txt
inst/scripts/pipeline-yeast1.sh
inst/scripts/sqlimport.sh
inst/scripts/reshape-marioni.pl
inst/scripts/temp.R
inst/scripts/pipeline-marioni.R
inst/scripts/reshape-yeast1.pl
inst/scripts/pipeline.sh
inst/scripts/pipeline-marioni.sh
inst/doc/plotting.R
inst/doc/withShortRead.R
inst/doc/plotting.Rnw
inst/doc/Genominator.pdf
inst/doc/Genominator.R
inst/doc/plotting.pdf
inst/doc/withShortRead.Rnw
inst/doc/withShortRead.pdf
inst/doc/Genominator.Rnw
inst/benchmark/idxTiming.R
vignettes/plotting.Rnw
vignettes/withShortRead.Rnw
vignettes/Genominator.Rnw
R/importAndManage.R
R/goodnessOfFit.R
R/diffExp.R
R/Genominator.R
R/coverage.R
R/emZero.R
R/primingWeights.R
R/plotRegion.R
R/annotation.R
man/plot.genominator.coverage.Rd
man/summarizeByAnnotation.Rd
man/aggregateExpData.Rd
man/joinExpData.Rd
man/computeCoverage.Rd
man/splitByAnnotation.Rd
man/applyMapped.Rd
man/getRegion.Rd
man/validAnnotation.Rd
man/addPrimingWeights.Rd
man/summarizeExpData.Rd
man/importToExpData.Rd
man/makeGeneRepresentation.Rd
man/regionGoodnessOfFit-methods.Rd
man/collapseExpData.Rd
man/Genominator.Rd
man/mergeWithAnnotation.Rd
man/plot.genominator.goodness.of.fit.Rd
man/ExpData.Rd
man/importFromAlignedReads.Rd
man/yeastAnno.Rd
man/computePrimingWeights.Rd
build/vignette.rds
tests/testEM.R_test
tests/testImport.R_test
tests/testGenominatorFxs.R_test
tests/runTests.R_test
tests/testGoodnessOfFit.R_test
tests/testDiffExp.R_test
tests/testHasOverlap.R_test
data/yeastAnno.rda
data/chr1_yeast.rda
data/yeastAnno.sources.rda
