Man pages for Genominator
Analyze, manage and store genomic data
| addPrimingWeights | Adding priming weights to an AlignedRead object. |
| aggregateExpData | Collapse data into unique entries |
| applyMapped | Apply a function over mapped data. |
| collapseExpData | Combine multiple data sets |
| computeCoverage | Compute effort-coverage values |
| computePrimingWeights | Compute weights to correct for random hexamer priming. |
| ExpData | Class "ExpData" |
| Genominator | Data backend for Genomic data |
| getRegion | Select a region from an ExpData object. |
| importFromAlignedReads | Import aligned reads to database |
| importToExpData | Import data to database |
| joinExpData | Merge ExpData objects |
| makeGeneRepresentation | Compute a gene representation from annotation. |
| mergeWithAnnotation | Combine data with annotation |
| plot.genominator.coverage | Create coverage plot |
| plot.genominator.goodness.of.fit | Create goodness-of-fit quantile-quantile plot |
| regionGoodnessOfFit-methods | Calculate goodness-of-fit statistics |
| splitByAnnotation | Split data into a list by annotation element. |
| summarizeByAnnotation | Summarize data based on genome annotation. |
| summarizeExpData | Summarize a data column |
| validAnnotation | Check for validity of a annotation object. |
| yeastAnno | Example datasets from Genominator |
