assignDefaultMthds: Assign default processing methods

In GladiaTOX: R Package for Processing High Content Screening data

Description

Function to assign default processing method to asid in input

Usage

assignDefaultMthds(asid)

Arguments

asid	Integer, the asid value(s) to which assign the default methods

Details

This function loads all components and endpoints for the given asid(s) in the database, and assigns a default set of processing methods to them.

This funciton will overwrite any previously assigned methods.

By default, each assay will receive 'none' at level 2. Level 3 data will receive, in order, 'bval.pmi' (39), 'resp.fc' (9), 'resp.log2' (7), and for endpoints with "down" analysis direction, 'resp.multneg1' (6).

Value

None

Examples

## Prepare for analysis before QC + process data
assignDefaultMthds(asid = 1L)

## Process data
gtoxRun(asid = 1L, slvl = 1, elvl = 6, mc.cores = 2)

GladiaTOX documentation built on Nov. 15, 2020, 2:07 a.m.