select_rho_partial: Data preprocessing for partial correlaton analysis
In INDEED: Interactive Visualization of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection Package
Description
Usage
Arguments
Value
Examples
View source: R/select_rho_partial.R
Description
A method that integrates differential expression (DE) analysis
and differential network (DN) analysis to select biomarker candidates for
cancer studies. select_rho_partial is the pre-processing step for INDEED
partial differential analysis.
Usage
1
2
select_rho_partial(data = NULL, class_label = NULL, id = NULL,
error_curve = "YES")
Arguments
data
This is a matrix of expression from all biomolecules and all samples.
class_label
This is a binary array with 0 for group 1 and 1 for group 2.
id
This is an array of biomolecule IDs.
error_curve
This is an option on whether a error curve plot will be
provided to the user, user can choose "YES" or "NO". The default is YES.
Value
A list of processed data for the next step, and generates an error curve to select rho
for graphical lasso.
Examples
1
2
select_rho_partial(data = Met_GU, class_label = Met_Group_GU, id = Met_name_GU,
error_curve = "YES")
INDEED documentation built on Nov. 8, 2020, 11:12 p.m.
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Description Usage Arguments Value Examples
View source: R/select_rho_partial.R
Description
A method that integrates differential expression (DE) analysis and differential network (DN) analysis to select biomarker candidates for cancer studies. select_rho_partial is the pre-processing step for INDEED partial differential analysis.
Usage
1 2 | select_rho_partial(data = NULL, class_label = NULL, id = NULL,
error_curve = "YES")
|
Arguments
data |
This is a matrix of expression from all biomolecules and all samples. |
class_label |
This is a binary array with 0 for group 1 and 1 for group 2. |
id |
This is an array of biomolecule IDs. |
error_curve |
This is an option on whether a error curve plot will be provided to the user, user can choose "YES" or "NO". The default is YES. |
Value
A list of processed data for the next step, and generates an error curve to select rho for graphical lasso.
Examples
1 2 | select_rho_partial(data = Met_GU, class_label = Met_Group_GU, id = Met_name_GU,
error_curve = "YES")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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