tests/testthat/test-getDataset.R

In ImmuneSpaceR: A Thin Wrapper around the ImmuneSpace Database

context("ISCon$getDataset()")


# Test getDataset() ------------------------------------------------------------
test_getDataset("SDY269", SDY269, "demographics")
test_getDataset("SDY269", SDY269, "elisa")
test_getDataset("SDY269", SDY269, "elispot")
test_getDataset("SDY269", SDY269, "fcs_analyzed_result")
test_getDataset("SDY269", SDY269, "gene_expression_files")
test_getDataset("SDY269", SDY269, "hai")
test_getDataset("SDY269", SDY269, "pcr")

test_getDataset("SDY180", SDY180, "fcs_control_files")
test_getDataset("SDY180", SDY180, "fcs_sample_files")
test_getDataset("SDY180", SDY180, "mbaa")
test_getDataset("SDY180", SDY180, "neut_ab_titer")

test_getDataset("SDY28", SDY28, "hla_typing")


test_that("returns empty data.table for invalid dataset name", {
  # check if it returned an empty data frame
  data <- suppressWarnings(try(SDY269$getDataset("fakeData", reload = TRUE)))
  expect_is(data, "data.table")
  expect_equal(nrow(data), 0)

  warning <- capture_warning(SDY269$getDataset("fakeData", reload = TRUE))
  expect_match(warning$message, "not a valid dataset")
})