Files in ImmuneSpaceR

A Thin Wrapper around the ImmuneSpace Database

NEWS.md

NAMESPACE

DESCRIPTION

README.md tests/testthat.R tests/testthat/test-getGEAnalysis.R tests/testthat/test-dataIntegration.R tests/testthat/test-getDataset.R tests/testthat/test-cytometry.R tests/testthat/test-listDatasets.R tests/testthat/test-listGEMatrices.R tests/testthat/test-CreateConnection.R tests/testthat/test-getParticipantData.R tests/testthat/test-listGEAnalysis.R tests/testthat/test-localPath.R tests/testthat/test-downloadGEFiles.R tests/testthat/test-getGEMatrix.R tests/testthat/test-plot.R tests/testthat/helper-getDataset.R tests/testthat/helper-getParticipantData.R tests/testthat/test-getGEInputs.R tests/testthat/helper-atStart.R tests/testthat/Rplots.pdf

tests/testthat/datasets/SDY269_pcr.rds

tests/testthat/datasets/SDY180_fcs_control_files.rds

tests/testthat/datasets/SDY269_elispot.rds

tests/testthat/datasets/SDY180_neut_ab_titer.rds

tests/testthat/datasets/SDY180_mbaa.rds

tests/testthat/datasets/SDY180_fcs_sample_files.rds

tests/testthat/datasets/SDY269_gene_expression_files.rds

tests/testthat/datasets/SDY28_hla_typing.rds

tests/testthat/datasets/SDY269_hai.rds

tests/testthat/datasets/SDY269_elisa.rds

tests/testthat/datasets/SDY269_demographics.rds

tests/testthat/datasets/SDY269_fcs_analyzed_result.rds

tests/manualTests/manualTests.R tests/manualTests/pgrpTesting.R R/CreateConnection.R R/ImmuneSpaceR.R R/utils.R R/template.R R/ISCon-cytometry.R R/ISCon-geneExpression.R R/ISCon-dataset.R R/netrc.R R/ISCon-plot.R R/theme.R R/ISCon.R R/ISCon-participantGroup.R R/ISCon-utils.R R/zzz.R man/ISpalette.Rd man/interactive_netrc.Rd man/template_IS.Rd man/write_netrc.Rd man/loadConnection.Rd man/ImmuneSpaceR-package.Rd man/theme_IS.Rd man/CreateConnection.Rd man/ImmuneSpaceConnection.Rd man/check_netrc.Rd

man/figures/README-plot-1.png

man/figures/logo.png

inst/extdata/saved_con.rds

inst/rmarkdown/templates/ImmuneSpace/template.yaml

inst/rmarkdown/templates/ImmuneSpace/resources/IStemplate.css

inst/rmarkdown/templates/ImmuneSpace/resources/IStemplate.scss

inst/rmarkdown/templates/ImmuneSpace/resources/git-pre-commit-hook

inst/rmarkdown/templates/ImmuneSpace/resources/labkey-logo.png

inst/rmarkdown/templates/ImmuneSpace/skeleton/skeleton.Rmd inst/doc/report_SDY144.R

inst/doc/Intro_to_ImmuneSpaceR.html

inst/doc/report_SDY144.Rmd inst/doc/report_SDY180.Rmd

inst/doc/interactiveNetrc.html

inst/doc/interactiveNetrc.Rmd inst/doc/report_SDY269.R

inst/doc/report_SDY180.html

inst/doc/getGEMatrix.R inst/doc/getDataset.Rmd

inst/doc/getDataset.html

inst/doc/interactiveNetrc.R inst/doc/Intro_to_ImmuneSpaceR.Rmd

inst/doc/getGEMatrix.html

inst/doc/getGEMatrix.Rmd inst/doc/report_SDY180.R inst/doc/getDataset.R

inst/doc/report_SDY144.html

inst/doc/Intro_to_ImmuneSpaceR.R

inst/doc/report_SDY269.html

inst/doc/report_SDY269.Rmd

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pkgdown/favicon/apple-touch-icon-180x180.png

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pkgdown/favicon/favicon.ico

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build/vignette.rds

vignettes/report_SDY144.Rmd vignettes/report_SDY180.Rmd vignettes/interactiveNetrc.Rmd vignettes/getDataset.Rmd vignettes/Intro_to_ImmuneSpaceR.Rmd vignettes/getGEMatrix.Rmd vignettes/report_SDY269.Rmd

vignettes/img/createNetrc.gif

vignettes/img/getDataset-views.png

vignettes/img/netrcOverwriteOption.gif

ImmuneSpaceR documentation built on Dec. 21, 2020, 2:01 a.m.