tests/testthat/test-plot.R

In ImmuneSpaceR: A Thin Wrapper around the ImmuneSpace Database

context("ISCon$plot()")


# Helper Functions ---------------------------------------------
testPlot <- function(con, dataset, ...) {
  res <- tryCatch(
    con$plot(dataset, ...),
    error = function(e) {
      return(e)
    }
  )
}


# Tests --------------------------------------------------------
# ---- Default Args for Reference ----------
# normalize_to_baseline = TRUE,
# type = "auto",
# filter = NULL,
# facet = "grid",
# text_size = 15,
# legend = NULL,
# show_virus_strain = FALSE,
# interactive = FALSE

test_that("default arguments", {
  res <- testPlot(
    con = SDY269,
    dataset = "hai"
  )
  expect_true(!is.null(res$plot))
})

test_that("normalize to baseline = FALSE", {
  res <- testPlot(
    con = SDY269,
    dataset = "hai",
    normalize_to_baseline = FALSE
  )
  expect_true(!is.null(res$plot))
})

test_that("type changes", {
  res <- testPlot(
    con = SDY269,
    dataset = "hai",
    type = "violin"
  )
  expect_true(!is.null(res$plot))
})

# filter must be in Rlabkey's format
test_that("non-null filter", {
  res <- testPlot(
    con = SDY269,
    dataset = "hai",
    filter = Rlabkey::makeFilter(c("study_time_collected", "EQUALS", "28"))
  )
  expect_true(!is.null(res$plot))
})

# facet styles allowed grid, wrap
test_that("non-grid facet", {
  res <- testPlot(
    con = SDY269,
    dataset = "hai",
    facet = "wrap"
  )
  expect_true(!is.null(res$plot))
})

test_that("alternative text-sizes", {
  res <- testPlot(
    con = SDY269,
    dataset = "hai",
    text_size = 20
  )
  expect_true(!is.null(res$plot))
})

# When there is no error, it comes back NULL
test_that("non-null legend", {
  res <- testPlot(
    con = SDY269,
    dataset = "hai",
    type = "heatmap", # must be heatmap for legend to be used
    legend = "Race" # Race, Gender, Age are possible
  )
  expect_true(is.null(res))
})

test_that("show_virus_strain = TRUE", {
  res <- testPlot(
    con = SDY269,
    dataset = "hai",
    show_virus_strain = TRUE
  )
  expect_true(!is.null(res$plot))
})

test_that("interactive = TRUE", {
  res <- testPlot(
    con = SDY269,
    dataset = "hai",
    interactive = TRUE
  )
  expect_true(!is.null(res$x)) # note: diff named list
})