API for InTAD
Search for correlation between epigenetic signals and gene expression in TADs
| Global functions | |
|---|---|
| InTADSig | Man page |
| InTADSig-class | Man page |
| combineInTAD | Man page Source code |
| combineWithLoops | Man page Source code |
| enhSel | Man page |
| enhSelGR | Man page |
| exprs,InTADSig-method | Man page |
| filterGeneExpr | Man page Source code |
| findCorFromLoops | Man page Source code |
| findCorrelation | Man page Source code |
| findGeneCorrelation | Source code |
| findLoopPairCorrelation | Source code |
| fnSE | Man page Source code |
| geneCoords | Man page |
| geneCoords,InTADSig-method | Man page |
| get.enr.bg.normfit | Man page Source code |
| loadSigInTAD | Man page Source code |
| loopsDfSel | Man page |
| mbAnnData | Man page |
| newSigInTAD | Man page Source code |
| plotCorAcrossRef | Man page Source code |
| plotCorrelation | Man page Source code |
| rpkmCountsSel | Man page |
| sigCoords | Man page |
| sigCoords,InTADSig-method | Man page |
| signals | Man page |
| signals,InTADSig-method | Man page |
| tadGR | Man page |
| txsSel | Man page |
