fnSE: Preparation for correlation analysis for a signal

Description Usage Arguments Details Value

View source: R/combineSignalsInTAD.R

Description

This function collects all genes for signal genomic region inside of Topologically Associated Domains (TADs)

Usage

1
fnSE(id, sigList, tadGR, tss, pickMaxOvlp, nearestTad)

Arguments

id

Id of signal from the list

sigList

List of signal GRs and their names

tadGR

TAD genomic regions

tss

Gene transcription start sites

pickMaxOvlp

Use TAD with max overlap

nearestTad

The table listing TADs nearest to each TSS #'

Details

The signal is checked if it is lying inside of TAD. Then all genes in this TAD are collected.

Value

Data.frame containing genes connected to signal


InTAD documentation built on Feb. 19, 2019, 2 a.m.