fnSE: Preparation for correlation analysis for a signal
In InTAD: Search for correlation between epigenetic signals and gene expression in TADs

This function collects all genes for signal genomic region inside of Topologically Associated Domains (TADs)

1	fnSE(id, sigList, tadGR, tss, pickMaxOvlp, nearestTad)

`id`	Id of signal from the list
`sigList`	List of signal GRs and their names
`tadGR`	TAD genomic regions
`tss`	Gene transcription start sites
`pickMaxOvlp`	Use TAD with max overlap
`nearestTad`	The table listing TADs nearest to each TSS #'

The signal is checked if it is lying inside of TAD. Then all genes in this TAD are collected.

Data.frame containing genes connected to signal

InTAD documentation built on Nov. 8, 2020, 7:47 p.m.

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