getWidgets: Get the widgets of InterMine

In InterMineR: R Interface with InterMine-Powered Databases

Description

Returns a representation of the available widgets for the mine. Each entry for the widget includes details of its type, the kind of data it processes, and any filters it accepts.

Usage

getWidgets(im)

Arguments

im	a list containing the base URL and API token.

Value

A data.frame containing information about the widgets that are available for each mine.

Note

The names of the widgets of the enrichment type can be passed as arguments to doEnrichment function.

Author(s)

InterMine Team

See Also

getGeneIds, doEnrichment

Examples

# Get available FlyMine widgets
FlyMine.widgets <- getWidgets(im = initInterMine(mine = listMines()["FlyMine"]))
# Get available HumanMine widgets
HumanMine.widgets <- getWidgets(im = initInterMine(mine = listMines()["HumanMine"]))

InterMineR documentation built on Nov. 8, 2020, 5:58 p.m.