Man pages for InteractionSet
Base Classes for Storing Genomic Interaction Data
| boundingBox | Get the bounding box |
| ContactMatrix-accessors | ContactMatrix accessors |
| ContactMatrix-class | ContactMatrix class and constructors |
| ContactMatrix-distances | Compute linear distances from ContactMatrix objects |
| ContactMatrix-overlaps | Find overlaps between GRanges and a ContactMatrix |
| ContactMatrix-sorting | ContactMatrix sorting and ordering |
| ContactMatrix-subset | ContactMatrix subsetting and combining |
| conversion | Convert between classes |
| distances | Get the linear distance for each interaction |
| GInteractions-class | GInteractions class and constructors |
| granges-methods | Equivalents of GRanges methods |
| interaction-accessors | Interaction accessors |
| interaction-bind | Interaction combining |
| interaction-compare | Interaction comparisons |
| InteractionSet-class | InteractionSet class and constructors |
| interaction-subset | Interaction subsetting and combining |
| linearize | Linearize 2D interactions into 1D ranges |
| linkOverlaps | Link overlapping regions |
| overlaps | Find overlaps between interactions in one or two dimensions |
| pairs | Extract paired ranges |
