Man pages for LMGene
LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
| genediff | Gene-by-gene and posterior p-value calculation function. |
| glog | Generalized log transformation function |
| LMGene | LMGene main function |
| lnorm | Lowess normalization function |
| lnormeS | Function to apply lowess normalization to an expression set. |
| neweS | Coerce a matrix to class ExpressionSet |
| norm | Normalization function |
| plotMeanSD | Plotting function for gene means and standard deviations |
| psmeans | Function to take means of probesets. |
| pvadjust | P-value adjusting function |
| rowaov | Gene by gene ANOVA function |
| sample.eS | Sample array data for LMGene |
| sample.ind | Sample probeset index vector |
| sample.mat | Sample array data for LMGene package |
| tranest | Glog transformation parameter estimation function |
| tranestAffyProbeLevel | Glog transformation parameter estimation function for... |
| transeS | Function to apply the glog transform to an expression set. |
| vlist | Sample experimental/phenotype data for LMGene package |
