Man pages for LPE
Methods for analyzing microarray data using Local Pooled Error (LPE) method
| am.trans | Transform replicated arrays into (A,M) format |
| baseOlig.error | Evaluates LPE variance function of M for quantiles of A... |
| baseOlig.error.step1 | Evaluates LPE variance function of M for quantiles of A... |
| baseOlig.error.step2 | Evaluates LPE variance function of M for quantiles of A... |
| fdr.adjust | FDR adjustment procedures |
| fixbounds.predict.smooth.spline | Makes the predicted variance non negative |
| iqr | Inter-quartile range |
| Ley | Gene Expression Data from Mouse Immune response study, (2002) |
| lowess.normalize | lowess normalization of the data (based on M vs A graph) |
| lpe | Evaluates local pooled error significance test |
| mt.rawp2adjp | Adjusted p-values for simple multiple testing procedures |
| n.genes.adaptive.int | Calcuates the number of genes in various intervals... |
| permute | Calculating all possible permutations of a vector |
| preprocess | Preprocessing the data (IQR normalization, thresholding, log-... |
| quan.norm | Finding quartile range |
| quartile.normalize | Normalization based on quartile range |
| resamp.adj | Resampling based fdr adjustment |
