Man pages for LPE
Methods for analyzing microarray data using Local Pooled Error (LPE) method

am.transTransform replicated arrays into (A,M) format
baseOlig.errorEvaluates LPE variance function of M for quantiles of A...
baseOlig.error.step1Evaluates LPE variance function of M for quantiles of A...
baseOlig.error.step2Evaluates LPE variance function of M for quantiles of A...
fdr.adjustFDR adjustment procedures
fixbounds.predict.smooth.splineMakes the predicted variance non negative
iqrInter-quartile range
LeyGene Expression Data from Mouse Immune response study, (2002)
lowess.normalizelowess normalization of the data (based on M vs A graph)
lpeEvaluates local pooled error significance test
mt.rawp2adjpAdjusted p-values for simple multiple testing procedures
n.genes.adaptive.intCalcuates the number of genes in various intervals...
permuteCalculating all possible permutations of a vector
preprocessPreprocessing the data (IQR normalization, thresholding, log-...
quan.normFinding quartile range
quartile.normalizeNormalization based on quartile range
resamp.adjResampling based fdr adjustment
LPE documentation built on Nov. 17, 2017, 8:24 a.m.