MEIGO - MEtaheuristics for bIoinformatics Global Optimization

BayesFit | BayesFit |

CeSSR | Global optimization algorithm for MINLPs based on Scatter... |

CeVNSR | Global optimization algorithm for MINLPs based on VNS using a... |

cnolist | A CNOlist from CellNOptR paclage |

cur_params | Current values of all model parameters |

dhc | Local search algorithm within eSS |

essR | Global optimization algorithm for MINLPs based on Scatter... |

essR-MEIGOR | Global optimization algorithm for MINLPs based on Scatter... |

essR_multistart | Multistart function for eSS |

eucl_dist | Computes the euclidean distance between the rows of two... |

ith_essR | Auxiliary function to perform parallel runs |

ith_VNSR | Auxiliary function to perform parallel runs |

MEIGO | MEIGO main function |

MEIGOR-package | Global optimization Toolbox |

model | A model from CellNoptR |

nls_fobj | Auxiliary function to evaluate constraints |

optim_fobj | Gateway function to evaluate the objective function when the... |

paramsOpt | Optimal parameters for simulation with CNORode |

runBayesFit | Running the BayesFit optimisation |

rvnds_hamming | Main VNS function |

rvnds_local | Local search in VNS |

solnp_eq | Gateway function to evaluate the equality constraints when... |

solnp_fobj | Gateway function to evaluate the objective function when... |

solnp_ineq | Gateway function to evaluate the inequality constraints when... |

ssm_beyond | Function that expands the search direction when a good... |

ssm_defaults | Sets the default options for eSSR |

ssm_evalfc | Gateway function to evaluate the objective function in essR |

ssm_isdif2 | Calculates relative errors between two vectors |

ssm_localsolver | Configure local solver |

ssm_optset | Assigns values to the options defined by the user |

ssm_penalty_function | Calculates the penalized objective function in constrained... |

ssm_round_int | Rounds variables declared as integer of binary |

vns_defaults | Default options for VNS |

vns_optset | Set VNS options |

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