API for MIMOSA
Mixture Models for Single-Cell Assays
| Global functions | |
|---|---|
| .fitMCMC | Man page Source code |
| .wrap | Source code |
| BetaMix | Source code |
| BetaMixResult | Source code |
| BetaMixResult-class | Man page |
| CompleteDataLL | Source code |
| CompleteDataLLRcpp | Source code |
| ConstructMIMOSAExpressionSet | Man page Source code |
| ICS | Man page |
| MCMCResult | Source code |
| MDMix | Man page Source code |
| MIMOSA | Man page |
| MIMOSA,formula,ExpressionSet-method | Man page |
| MIMOSA-package | Man page |
| MIMOSAExpressionSet | Man page Source code |
| MIMOSAResult | Man page |
| MIMOSAResult-class | Man page |
| MarginalGT | Source code |
| MarginalNE | Source code |
| MarginalNULL | Source code |
| alphaProp1 | Source code |
| asinh_trans | Man page Source code |
| betaintegral | Source code |
| betaintegral_R | Source code |
| betaintegral_R2 | Source code |
| boxplotMIMOSAResultList | Man page |
| combine.MIMOSA | Man page Source code |
| constrainedNRLL | Source code |
| constrainedRLL | Source code |
| contourPlot | Source code |
| countsTable | Man page |
| countsTable,MCMCResult-method | Man page |
| countsTable,MDMixResult-method | Man page |
| countsTable,MIMOSAResult-method | Man page |
| countsTable,MIMOSAResultList-method | Man page |
| countsTable.MIMOSAResultList | Man page |
| definition | Source code Source code Source code |
| estimateProportions2 | Source code |
| estimateProportions2.MDMixResult | Source code |
| estimate_logZus | Source code |
| f0 | Source code |
| f0m | Source code |
| f1 | Source code |
| f1.log | Source code |
| f2 | Source code |
| f2.log | Source code |
| fa | Source code |
| fb | Source code |
| fdr | Man page Source code |
| fdr.MIMOSAResult | Man page Source code |
| fdr.MIMOSAResultList | Man page Source code |
| fdr.matrix | Man page Source code |
| fdrComparison | Source code |
| fm | Source code |
| fu | Source code |
| getPosteriorResponseRate | Man page Source code |
| getW | Man page |
| getW.MIMOSAResult | Man page |
| getW.MIMOSAResultList | Man page |
| getZ | Man page |
| getZ.MIMOSAResult | Man page |
| getZ.MIMOSAResultList | Man page |
| getpData | Source code |
| getpData.icsdata | Source code |
| gibbsPsPu | Source code |
| gradConstrainedRLL | Source code |
| gradCostrainedNRLL | Source code |
| hessConstrainedNRLL | Source code |
| hessConstrainedRLL | Source code |
| huberFilter | Source code |
| icsdata2mvicsdata | Source code |
| initBetaMix | Source code |
| integrand | Source code |
| lkbeta | Source code |
| makeGradientHalfComponent | Source code |
| makeGradientNULLComponent | Source code |
| makeGradientRespComponent | Source code |
| makeHessianHalfComponent | Source code |
| makeHessianNULLComponent | Source code |
| makeHessianRespComponent | Source code |
| makeLogLikeNULLComponent | Source code |
| makeLogLikeRespComponent | Source code |
| pData,BetaMixResult | Man page |
| pData,BetaMixResult-method | Man page |
| pData,MCMCResult-method | Man page |
| pData,MDMixResult-method | Man page |
| pData,MIMOSAResult-method | Man page |
| pData,MIMOSAResultList-method | Man page |
| pData.MIMOSAResultList | Man page |
| pData<-,BetaMixResult,data.frame-method | Man page |
| pData<-,MCMCResult,ANY-method | Man page |
| pData<-,MIMOSAResult,ANY-method | Man page |
| plot.BetaMixResult | Source code |
| plotPriors | Source code |
| posteriorSample | Source code |
| print.MIMOSAResultList | Man page |
| proportions | Source code |
| proportions.icsdata | Source code |
| refactorPData | Source code |
| roc | Source code |
| setReference | Source code |
| setpData | Source code |
| setpData.icsdata | Source code |
| show | Man page |
| show,MIMOSAResult-method | Man page |
| simAlpha.s | Source code |
| simAlpha.u | Source code |
| simMD | Source code |
| simQ | Source code |
| simZ | Source code |
| simulate2 | Source code |
| test | Source code |
| volcanoPlot | Man page |
