Files in MMAPPR2

Mutation Mapping Analysis Pipeline for Pooled RNA-Seq

.BBSoptions

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

R/all_classes.R R/MMAPPR2.R R/main.R R/aicc_loess.R R/s4_methods.R R/peaks.R R/samtools_pileup.R R/output.R R/all_generics.R R/distance.R R/candidates.R vignettes/MMAPPR2.Rmd man/MMAPPR2.Rd man/MmapprParam.Rd man/peakRefinement.Rd man/outputMmapprData.Rd man/generateCandidates.Rd man/tempOutputFolder.Rd man/MmapprData-getters.Rd man/loessFit.Rd man/MmapprParam-functions.Rd man/calculateDistance.Rd man/MmapprData-class.Rd man/mmappr.Rd man/prePeak.Rd tests/testthat.R tests/testthat/helper-functions.R tests/testthat/test_output.R tests/testthat/test_main.R tests/testthat/test_peaks.R tests/testthat/test_candidates.R tests/testthat/test_samtools_pileup.R tests/testthat/test_distance.R tests/testthat/test_loess.R

tests/testthat/test_data/dummy.fasta

tests/testthat/test_data/bam_files/zy14_dummy.bam

tests/testthat/test_data/bam_files/zy14_dummy.bam.bai

tests/testthat/test_data/bam_files/README

tests/testthat/test_data/objects/post_peakref_dummy_md.RDS

tests/testthat/test_data/objects/post_prepeak_dummy_md.RDS

tests/testthat/test_data/objects/post_calcdist_dummy_md.RDS

tests/testthat/test_data/objects/post_loess_dummy_md.RDS

tests/testthat/test_data/objects/vep_flags.RDS

inst/CITATION

inst/doc/MMAPPR2.R

inst/doc/MMAPPR2.html

inst/doc/MMAPPR2.Rmd

MMAPPR2 documentation built on Nov. 8, 2020, 6:53 p.m.