Files in MMDiff

Statistical Testing for ChIP-Seq data sets

MMDiff/.BBSoptions

MMDiff/DESCRIPTION

MMDiff/NAMESPACE

MMDiff/R

MMDiff/R/compDist.R

MMDiff/R/compDistWrapper.R

MMDiff/R/compHistDists.R

MMDiff/R/compHists.R

MMDiff/R/compPeakMatrix.R

MMDiff/R/compPeakTotalCounts.R

MMDiff/R/compute.pvalues.R

MMDiff/R/detPeakPvals.R

MMDiff/R/determineGroupComps.R

MMDiff/R/findComps.R

MMDiff/R/findOutliers.R

MMDiff/R/getNormFactors.R

MMDiff/R/getPeakIds4shift.R

MMDiff/R/getPeakProfiles.R

MMDiff/R/getReads.R

MMDiff/R/getReadsWrapper.R

MMDiff/R/getShift.R

MMDiff/R/mmd.R

MMDiff/R/plotHistDists.R

MMDiff/R/plotPeak.R

MMDiff/R/shiftReads.R

MMDiff/R/sortReads.R

MMDiff/R/zzz.R

MMDiff/build

MMDiff/build/vignette.rds

MMDiff/data

MMDiff/data/Cfp1Dists.RData

MMDiff/data/Cfp1Profiles.RData

MMDiff/data/datalist

MMDiff/inst

MMDiff/inst/doc

MMDiff/inst/doc/MMDiff.R

MMDiff/inst/doc/MMDiff.Rnw

MMDiff/inst/doc/MMDiff.pdf

MMDiff/man

MMDiff/man/Cfp1Dists.Rd MMDiff/man/Cfp1Profiles.Rd MMDiff/man/MMDiff-package.Rd MMDiff/man/compHistDists.Rd MMDiff/man/detPeakPvals.Rd MMDiff/man/findOutliers.Rd MMDiff/man/getNormFactors.Rd MMDiff/man/getPeakProfiles.Rd MMDiff/man/plotHistDists.Rd MMDiff/man/plotPeak.Rd

MMDiff/vignettes

MMDiff/vignettes/ExamplePeak419.pdf MMDiff/vignettes/GMDDists.pdf MMDiff/vignettes/MMDDists.pdf

MMDiff/vignettes/MMDiff.Rnw

MMDiff/vignettes/MMDiff_bib.bib

MMDiff/vignettes/PearsonDists.pdf MMDiff/vignettes/forwardVSReverse_WT_2.pdf MMDiff/vignettes/strandShifts_WT_2.pdf

MMDiff documentation built on Oct. 5, 2016, 4:28 a.m.