Statistical Testing for ChIP-Seq data sets

Cfp1Dists | Example DBA object used to illustrate usage of the MMDiff... |

Cfp1Profiles | Example DBA object used to illustrate usage of the MMDiff... |

compHistDists | Compute distances between pairs of histograms |

detPeakPvals | Compute p-values for each peak based on distances between... |

findOutliers | Find peaks with extreme count values |

getNormFactors | Determine Normalisation factors |

getPeakProfiles | Add histograms (binned read enrichment profiles) to an... |

MMDiff-package | Statistical Testing for ChIP-Seq data sets |

plotHistDists | plot MMD distances |

plotPeak | plot read enrichment profiles at a specific peak for all... |

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