MPFE: Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MPFE")
AuthorPeijie Lin, Sylvain Foret, Conrad Burden
Bioconductor views DNAMethylation HighThroughputSequencingData MethylSeq
Date of publicationNone
MaintainerConrad Burden <conrad.burden@anu.edu.au>
LicenseGPL (>= 3)
Version1.10.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/estimatePatterns.R R/estimatePatternsOneColumn.R R/patternMap.R R/plotPatterns.R
README
build
build/vignette.rds
data
data/patternsExample.rda
inst
inst/doc
inst/doc/MPFE.R
inst/doc/MPFE.Rnw
inst/doc/MPFE.pdf
man
man/MPFE-package.Rd man/estimatePatterns.Rd man/patternMap.Rd man/patternsExample.Rd man/plotPatterns.Rd
vignettes
vignettes/MPFE.Rnw

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