MPFE: Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

AuthorPeijie Lin, Sylvain Foret, Conrad Burden
Date of publicationNone
MaintainerConrad Burden <conrad.burden@anu.edu.au>
LicenseGPL (>= 3)
Version1.10.0

View on Bioconductor

Files

MPFE/DESCRIPTION
MPFE/NAMESPACE
MPFE/R
MPFE/R/estimatePatterns.R MPFE/R/estimatePatternsOneColumn.R MPFE/R/patternMap.R MPFE/R/plotPatterns.R
MPFE/README
MPFE/build
MPFE/build/vignette.rds
MPFE/data
MPFE/data/patternsExample.rda
MPFE/inst
MPFE/inst/doc
MPFE/inst/doc/MPFE.R
MPFE/inst/doc/MPFE.Rnw
MPFE/inst/doc/MPFE.pdf
MPFE/man
MPFE/man/MPFE-package.Rd MPFE/man/estimatePatterns.Rd MPFE/man/patternMap.Rd MPFE/man/patternsExample.Rd MPFE/man/plotPatterns.Rd
MPFE/vignettes
MPFE/vignettes/MPFE.Rnw

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