MPFE: Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data
Version 1.12.0

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

AuthorPeijie Lin, Sylvain Foret, Conrad Burden
Bioconductor views DNAMethylation HighThroughputSequencingData MethylSeq
Date of publicationNone
MaintainerConrad Burden <conrad.burden@anu.edu.au>
LicenseGPL (>= 3)
Version1.12.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MPFE")

Getting started

Package overview

Popular man pages

estimatePatterns: Estimate distribution of methylation patterns
MPFE-package: MPFE
patternMap: Plot a representation of the patterns and their frequencies
patternsExample: patternsExample
plotPatterns: Plot methylation pattern distribution
See all...

All man pages Function index File listing

Man pages

estimatePatterns: Estimate distribution of methylation patterns
MPFE-package: MPFE
patternMap: Plot a representation of the patterns and their frequencies
patternsExample: patternsExample
plotPatterns: Plot methylation pattern distribution

Functions

MPFE Man page
MPFE-package Man page
estimatePatterns Man page Source code
estimatePatternsOneColumn Source code
patternMap Man page Source code
patternsExample Man page
plotPatterns Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/estimatePatterns.R
R/estimatePatternsOneColumn.R
R/patternMap.R
R/plotPatterns.R
README
build
build/vignette.rds
data
data/patternsExample.rda
inst
inst/doc
inst/doc/MPFE.R
inst/doc/MPFE.Rnw
inst/doc/MPFE.pdf
man
man/MPFE-package.Rd
man/estimatePatterns.Rd
man/patternMap.Rd
man/patternsExample.Rd
man/plotPatterns.Rd
vignettes
vignettes/MPFE.Rnw
MPFE documentation built on May 20, 2017, 10:02 p.m.

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