MPFE: Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

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Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Author
Peijie Lin, Sylvain Foret, Conrad Burden
Date of publication
None
Maintainer
Conrad Burden <conrad.burden@anu.edu.au>
License
GPL (>= 3)
Version
1.10.0

View on Bioconductor

Man pages

estimatePatterns
Estimate distribution of methylation patterns
MPFE-package
MPFE
patternMap
Plot a representation of the patterns and their frequencies
patternsExample
patternsExample
plotPatterns
Plot methylation pattern distribution

Files in this package

MPFE/DESCRIPTION
MPFE/NAMESPACE
MPFE/R
MPFE/R/estimatePatterns.R
MPFE/R/estimatePatternsOneColumn.R
MPFE/R/patternMap.R
MPFE/R/plotPatterns.R
MPFE/README
MPFE/build
MPFE/build/vignette.rds
MPFE/data
MPFE/data/patternsExample.rda
MPFE/inst
MPFE/inst/doc
MPFE/inst/doc/MPFE.R
MPFE/inst/doc/MPFE.Rnw
MPFE/inst/doc/MPFE.pdf
MPFE/man
MPFE/man/MPFE-package.Rd
MPFE/man/estimatePatterns.Rd
MPFE/man/patternMap.Rd
MPFE/man/patternsExample.Rd
MPFE/man/plotPatterns.Rd
MPFE/vignettes
MPFE/vignettes/MPFE.Rnw