MPFE-package: MPFE

Description Details Author(s) Examples

Description

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and sequencing error rate.

Details

Package: MPFE
Type: Package
License: GPL(>=3)

The main component of this package is the function estimatePatterns, which reads a table of read counts of bisulphite sequencing data for a given amplicon and generates a table and plot of the estimated distribution over methylation patterns.

Author(s)

Peijie Lin, Sylvain Foret, Conrad Burden

Maintainer: [email protected]

Examples

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  data(patternsExample)
  estimates <- estimatePatterns(patternsExample, epsilon=0.02, eta=0.01)
  estimates
  plotPatterns(estimates[[2]])

MPFE documentation built on Nov. 1, 2018, 5:03 a.m.