Description Details Author(s) Examples

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and sequencing error rate.

Package: | MPFE |

Type: | Package |

License: | GPL(>=3) |

The main component of this package is the function `estimatePatterns`

,
which reads a table of read counts of bisulphite sequencing data for a given
amplicon and generates a table and plot of the estimated distribution over
methylation patterns.

Peijie Lin, Sylvain Foret, Conrad Burden

Maintainer: [email protected]

1 2 3 4 | ```
data(patternsExample)
estimates <- estimatePatterns(patternsExample, epsilon=0.02, eta=0.01)
estimates
plotPatterns(estimates[[2]])
``` |

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