plotPatterns: Plot methylation pattern distribution

In MPFE: Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Description

Plot the observed distribution and the estimated distribution of the methylation patterns

Usage

  plotPatterns(compareData, yLimit1=NULL, yLimit2=NULL)

Arguments

compareData	data frame, obtained from the output of the function estimatePatterns
yLimit1	upper limit of y-axis on left hand scale of the first graph. If NULL, defaults to show all patterns
yLimit2	upper limit of y-axis on left hand scale of the second graph. If NULL, defaults to show most patterns

Details

The two graphs in the output plot are the same but have different ranges. The parameters yLimit1 and yLimit2 control the range of the y_axis on the plots produced.

Value

A plot that compares the observed read distribution with the estimated distribution.

Author(s)

Peijie Lin, Sylvain Foret, Conrad Burden

Examples

  data(patternsExample)
  estimates <- estimatePatterns(patternsExample, 
                                epsilon=0.02, 
                                eta=0.01)
  plotPatterns(estimates[[1]])

MPFE documentation built on Nov. 8, 2020, 7:49 p.m.