Global functions | |
---|---|
ChrEpi | Man page |
MpraObject | Man page |
MpraObject,SummarizedExperiment-method | Man page |
MpraObject,matrix-method | Man page |
analyzeComparative | Man page Source code |
analyzeQuantification | Man page Source code |
autoChooseModel | Source code |
ce.colAnnot | Man page |
ce.control | Man page |
ce.dnaCounts | Man page |
ce.rnaCounts | Man page |
checkForIntercept | Source code |
compute.depth | Source code |
controls | Man page |
controls,MpraObject-method | Man page |
cost.dna | Source code |
cost.dnarna | Source code |
cost.rna | Source code |
dnaAnnot | Man page |
dnaAnnot,MpraObject-method | Man page |
dnaCounts | Man page |
dnaCounts,MpraObject-method | Man page |
dnaDepth | Man page |
dnaDepth,MpraObject-method | Man page |
est.mode | Source code |
estimateDepthFactors | Man page Source code |
estimateFactors | Source code |
extractModelParameters_DNA | Man page |
extractModelParameters_RNA | Man page |
extractProp | Source code |
fit.dnarna.noctrlobs | Source code |
fit.dnarna.onlyctrl.iter | Source code |
get.ll.functions | Source code |
getAlpha | Man page Source code |
getDesignMat | Source code |
getDistrParam_DNA | Man page Source code |
getDistrParam_RNA | Man page Source code |
getFits_DNA | Man page Source code |
getFits_RNA | Man page Source code |
getModelParameters_DNA | Man page Source code |
getModelParameters_RNA | Man page Source code |
getSingleAlpha | Source code |
isNestedDesign | Source code |
ll.dna.gamma.pois | Source code |
ll.dna.ln | Source code |
ll.rna.gamma.pois | Source code |
ll.rna.ln.ln | Source code |
ll.rna.ln.nb | Source code |
model | Man page |
model,MpraObject-method | Man page |
reformatModels | Source code |
rnaAnnot | Man page |
rnaAnnot,MpraObject-method | Man page |
rnaCounts | Man page |
rnaCounts,MpraObject-method | Man page |
rnaDepth | Man page |
rnaDepth,MpraObject-method | Man page |
setDepthFactors | Man page Source code |
setModel | Man page Source code |
simulateMPRA | Man page Source code |
testCoefficient | Man page Source code |
testEmpirical | Man page Source code |
testLrt | Man page Source code |
validateMpraObject | Source code |
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