It is made from
It is the output of proteinSummarization function from MSstatsTMT.
It should include the required columns as below.
The variables are as follows:
A data frame with 93258 rows and 8 variables.
Run : MS run ID
Protein : Protein ID
Abundance: Protein-level summarized abundance
Channel : Labeling information (126, ... 131)
Condition : Condition (ex. Healthy, Cancer, Time0)
BioReplicate : Unique ID for biological subject.
TechRepMixture : Unique ID for technical replicate of one TMT mixture.
Mixture : Unique ID for TMT mixture.
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