MatrixRider
Obtain total affinity and occupancies for binding site matrices on a given sequence

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MatrixRider: Obtain total affinity and occupancies for binding site matrices on a given sequence

MatrixRider: Obtain total affinity and occupancies for binding site matrices on a given sequence

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

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Package overview Total affinity and occupancies

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Vignettes Man pages API and functions Files

Package details
AuthorElena Grassi
Bioconductor views GeneRegulation Genetics MotifAnnotation
MaintainerElena Grassi <grassi.e@gmail.com>
LicenseGPL-3
Version1.22.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MatrixRider")

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MatrixRider documentation built on Nov. 8, 2020, 8:25 p.m.

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