deg_def: A DEG definition function
In MetaVolcanoR: Gene Expression Meta-analysis Visualization Tool
Description
Usage
Arguments
Value
Examples
Description
This function creates a new variable indicating DEGs as -1, 0, 1 based on the
user-defined foldchange and p-value criteria
Usage
1
deg_def(diffexp, pcriteria, foldchangecol, pv, fc)
Arguments
diffexp
data.frame/data.table with differential expression results
pcriteria
column name of the pvalue variable <strings>
foldchangecol
column name of the foldchange variable <string>
pv
pvalue threshold <double>
fc
foldchange threshold <double>
Value
data.table/data.frame with a new deg variable
Examples
1
2
3
data(diffexplist)
diffexp <- deg_def(diffexplist[[1]], "pvalue", "Log2FC", 0.05, 0)
table(diffexp[['deg']])
MetaVolcanoR documentation built on Nov. 8, 2020, 7:52 p.m.
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Description Usage Arguments Value Examples
Description
This function creates a new variable indicating DEGs as -1, 0, 1 based on the user-defined foldchange and p-value criteria
Usage
1 | deg_def(diffexp, pcriteria, foldchangecol, pv, fc)
|
Arguments
diffexp |
data.frame/data.table with differential expression results |
pcriteria |
column name of the pvalue variable <strings> |
foldchangecol |
column name of the foldchange variable <string> |
pv |
pvalue threshold <double> |
fc |
foldchange threshold <double> |
Value
data.table/data.frame with a new deg variable
Examples
1 2 3 | data(diffexplist)
diffexp <- deg_def(diffexplist[[1]], "pvalue", "Log2FC", 0.05, 0)
table(diffexp[['deg']])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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