plot_rem: A function to plot the Random Effect Model (REM) MetaVolcano
In MetaVolcanoR: Gene Expression Meta-analysis Visualization Tool

Description Usage Arguments Value Examples

This function plots the REM MetaVolcano using ggplot2

1	plot_rem(meta_diffexp, jobname, outputfolder, genecol, metathr)

`meta_diffexp`	data.frame/data.table containing the REM results from rem_mv() <data.table/data.frame>
`jobname`	name of the running job <string>
`outputfolder`	/path where to write the results/ <string>
`genecol`	column name of the variable to label genes in the .html file <string>
`metathr`	top percentage of perturbed genes to be highlighted <double>

ggplot2 object

data(diffexplist)
diffexplist <- lapply(diffexplist, function(del) {
    dplyr::filter(del, grepl("MP", Symbol))
})
mv <- rem_mv(diffexplist, metathr = 0.1)
gg <- plot_rem(mv@metaresult, "MV", ".", "Symbol", 0.01)
plot(gg)