miRNA conservation table generation function

Share:

Description

This function generates conv_id, which describes conservation information of each human miRNA, from the scratch

Usage

1
HS_conv_id(taxid=9606,species="hsa",destdir="./")

Arguments

taxid

taxon id for human. Default is 9606

species

Three characters string which describe human. Default is "hsa".

destdir

Directory where "HS_conv_id" is saved. Default is "./".

Details

This function computes conv_id, which describes conservation information of each human miRNA, used in the MiRaGE server described in Yoshizawa et al (2011). It saves data frame conv_id as the name of "HS_conv_id" in the destination directory.

References

Yoshizawa, M., Taguchi, Y-h., and Yasuda, J. (2011), Inference of Gene Regulation via miRNAs During ES Cell Differentiation Using MiRaGE Method. Int J Mol Sci 12(12):9265-9276

Examples

1
## Not run: HS_conv_id()