MiRaGE: MiRNA Ranking by Gene Expression
Version 1.18.0

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

AuthorY-h. Taguchi <tag@granular.com>
Bioconductor views GeneExpression Microarray RNASeq SAGE Sequencing
Date of publicationNone
MaintainerY-h. Taguchi <tag@granular.com>
LicenseGPL
Version1.18.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MiRaGE")

Popular man pages

gene_exp: This ExpressionSet represents gene expression of lung cancer...
getMiRaGEData: Data retrieval function for MiRaGE
HS_conv_id: miRNA conservation table generation function
id_conv_gen: Conversion table between refseq id vs various gene id/probe...
MiRaGE: Inference of Target Gene Regulation via MicroRNA
MM_conv_id: miRNA conservation table generation function
TBL2_MM_gen: The target genes table for mouse miRNAs
See all...

All man pages Function index File listing

Man pages

gene_exp: This ExpressionSet represents gene expression of lung cancer...
getMiRaGEData: Data retrieval function for MiRaGE
HS_conv_id: miRNA conservation table generation function
id_conv_gen: Conversion table between refseq id vs various gene id/probe...
MiRaGE: Inference of Target Gene Regulation via MicroRNA
MM_conv_id: miRNA conservation table generation function
TBL2_HS_gen: The target genes table for human miRNAs
TBL2_MM_gen: The target genes table for mouse miRNAs

Functions

HS_conv_id Man page Source code
MM_conv_id Man page Source code
MiRaGE Man page Source code
MiRaGEAnalysis Source code
MiRaGEMean Source code
MiRaGEMixed Source code
MiRaGEOneByOne Source code
TBL2_HS_gen Man page Source code
TBL2_MM_gen Man page Source code
gene_exp Man page
getMiRaGEData Man page Source code
id_conv_gen Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/HS_conv_id.R
R/MM_conv_id.R
R/MiRaGEAnalysis.R
R/MiRaGEMean.R
R/MiRaGEMixed.R
R/MiRaGEOneByOne.R
R/MiRaGE_r.R
R/TBL2_HS_gen.R
R/TBL2_MM_gen.R
R/getMiRaGEData.R
R/id_conv_gen.R
build
build/vignette.rds
data
data/gene_exp.rda
inst
inst/CITATION
inst/doc
inst/doc/MiRaGE.R
inst/doc/MiRaGE.Rnw
inst/doc/MiRaGE.pdf
inst/extdata
inst/extdata/x_all_7a.csv
man
man/HS_conv_id.Rd
man/MM_conv_id.Rd
man/MiRaGE.Rd
man/TBL2_HS_gen.Rd
man/TBL2_MM_gen.Rd
man/gene_exp.Rd
man/getMiRaGEData.Rd
man/id_conv_gen.Rd
vignettes
vignettes/.goutputstream-0CTGCW
vignettes/.goutputstream-E9SXCW
vignettes/MiRaGE.Rnw
MiRaGE documentation built on May 20, 2017, 9:40 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.