MiRaGE: MiRNA Ranking by Gene Expression

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author
Y-h. Taguchi <tag@granular.com>
Date of publication
None
Maintainer
Y-h. Taguchi <tag@granular.com>
License
GPL
Version
1.16.0

View on Bioconductor

Man pages

gene_exp
This ExpressionSet represents gene expression of lung cancer...
getMiRaGEData
Data retrieval function for MiRaGE
HS_conv_id
miRNA conservation table generation function
id_conv_gen
Conversion table between refseq id vs various gene id/probe...
MiRaGE
Inference of Target Gene Regulation via MicroRNA
MM_conv_id
miRNA conservation table generation function
TBL2_HS_gen
The target genes table for human miRNAs
TBL2_MM_gen
The target genes table for mouse miRNAs

Files in this package

MiRaGE/DESCRIPTION
MiRaGE/NAMESPACE
MiRaGE/R
MiRaGE/R/HS_conv_id.R
MiRaGE/R/MM_conv_id.R
MiRaGE/R/MiRaGEAnalysis.R
MiRaGE/R/MiRaGEMean.R
MiRaGE/R/MiRaGEMixed.R
MiRaGE/R/MiRaGEOneByOne.R
MiRaGE/R/MiRaGE_r.R
MiRaGE/R/TBL2_HS_gen.R
MiRaGE/R/TBL2_MM_gen.R
MiRaGE/R/getMiRaGEData.R
MiRaGE/R/id_conv_gen.R
MiRaGE/build
MiRaGE/build/vignette.rds
MiRaGE/data
MiRaGE/data/gene_exp.rda
MiRaGE/inst
MiRaGE/inst/CITATION
MiRaGE/inst/doc
MiRaGE/inst/doc/MiRaGE.R
MiRaGE/inst/doc/MiRaGE.Rnw
MiRaGE/inst/doc/MiRaGE.pdf
MiRaGE/inst/extdata
MiRaGE/inst/extdata/x_all_7a.csv
MiRaGE/man
MiRaGE/man/HS_conv_id.Rd
MiRaGE/man/MM_conv_id.Rd
MiRaGE/man/MiRaGE.Rd
MiRaGE/man/TBL2_HS_gen.Rd
MiRaGE/man/TBL2_MM_gen.Rd
MiRaGE/man/gene_exp.Rd
MiRaGE/man/getMiRaGEData.Rd
MiRaGE/man/id_conv_gen.Rd
MiRaGE/vignettes
MiRaGE/vignettes/.goutputstream-0CTGCW
MiRaGE/vignettes/.goutputstream-E9SXCW
MiRaGE/vignettes/MiRaGE.Rnw