TBL2_MM_gen: The target genes table for mouse miRNAs

In MiRaGE: MiRNA Ranking by Gene Expression

Description

This function generates target gene tables for human miRNAs base upon simple seed match toward 3' UTR of target genes

Usage

TBL2_MM_gen(SP="mmu",destdir="./")

Arguments

SP	Three characters string which describe mouse. Default is "mmu".
destdir	Directory where "id_conv" is saved. Default is "./".

Details

This function generates target gene tables for mouse miRNAs, used in the MiRaGE server described in Yoshizawa et al (2011). It saves data frame "TBL2" as the name of "TBL2_MM" in the destination directory.

References

Yoshizawa, M., Taguchi, Y-h., and Yasuda, J. (2011), Inference of Gene Regulation via miRNAs During ES Cell Differentiation Using MiRaGE Method. Int J Mol Sci 12(12):9265-9276

Examples

## Not run: TBL2_MM_gen()

MiRaGE documentation built on Nov. 8, 2020, 8:15 p.m.