convert_to_treedata: convert dataframe contained hierarchical relationship or...

In MicrobiotaProcess: an R package for analysis, visualization and biomarker discovery of microbiome

Description

convert dataframe contained hierarchical relationship or other classes to treedata class

Usage

convert_to_treedata(data, type = "species", ...)

Arguments

data	data.frame, such like the tax_table of phyloseq.
type	character, the type of datasets, default is "species", if the dataset is not about species, #' such as dataset of kegg function, you should set it to "others".
...,	additional parameters.

Value

treedata class.

Author(s)

Shuangbin Xu

Examples

data(hmp_aerobiosis_small)
head(taxda)
treedat <- convert_to_treedata(taxda)

MicrobiotaProcess documentation built on April 18, 2021, 6 p.m.