read_qza: read the qza file, output of qiime2.
In MicrobiotaProcess: an R package for analysis, visualization and biomarker discovery of microbiome
Description
Usage
Arguments
Value
Examples
Description
the function was designed to read the ouput of qiime2.
Usage
1
Arguments
qzafile
character, the format of file should be one of
'BIOMV210DirFmt', 'TSVTaxonomyDirectoryFormat', 'NewickDirectoryFormat'
and 'DNASequencesDirectoryFormat'.
parallel
logical, whether parsing the taxonomy by multi-parallel,
efault is FALSE.
Value
list contained one or multiple object of feature table,
taxonomy table, tree and represent sequences.
Examples
1
2
3
4
otuqzafile <- system.file("extdata", "table.qza",
package="MicrobiotaProcess")
otuqza <- read_qza(otuqzafile)
str(otuqza)
MicrobiotaProcess documentation built on April 18, 2021, 6 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
the function was designed to read the ouput of qiime2.
Usage
1 |
Arguments
qzafile |
character, the format of file should be one of 'BIOMV210DirFmt', 'TSVTaxonomyDirectoryFormat', 'NewickDirectoryFormat' and 'DNASequencesDirectoryFormat'. |
parallel |
logical, whether parsing the taxonomy by multi-parallel, efault is FALSE. |
Value
list contained one or multiple object of feature table, taxonomy table, tree and represent sequences.
Examples
1 2 3 4 | otuqzafile <- system.file("extdata", "table.qza",
package="MicrobiotaProcess")
otuqza <- read_qza(otuqzafile)
str(otuqza)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.