get_varct: get the contribution of variables

In MicrobiotaProcess: an R package for analysis, visualization and biomarker discovery of microbiome

Description

get the contribution of variables

Usage

## S3 method for class 'pcoa'
get_varct(obj, ...)

get_varct(obj, ...)

## S3 method for class 'prcomp'
get_varct(obj, ...)

## S3 method for class 'pcasample'
get_varct(obj, ...)

Arguments

obj	prcomp class or pcasample class
...	additional parameters.

Value

the VarContrib class, contained the contribution and coordinate of features.

Examples

library(phyloseq)
data(GlobalPatterns)
subGlobal <- subset_samples(GlobalPatterns,
         SampleType %in% c("Feces", "Mock", "Ocean", "Skin"))
#pcares <- get_pca(subGlobal, method="hellinger") 
#varres <- get_varct(pcares)

MicrobiotaProcess documentation built on April 18, 2021, 6 p.m.